-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               50.1
- User:                                                              lsand039
- Dataset:                                  50-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   50.txt
- Observation count:                                                      377
- Number of variables:                                                     51
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      50.1static.report.2016.09.01.16.18.41.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            1.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472761121942
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 44.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   57606500
         Time       10.0 m (16.6% of max. 1.0 h)
         Re-anneals 597 (2.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   91753500
         Time       20.0 m (33.3% of max. 1.0 h)
         Re-anneals 834 (3.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   125289500
         Time       30.0 m (50.0% of max. 1.0 h)
         Re-anneals 1188 (4.7% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   160126500
         Time       40.0 m (66.6% of max. 1.0 h)
         Re-anneals 1560 (6.2% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   194328000
         Time       50.0 m (83.3% of max. 1.0 h)
         Re-anneals 1903 (7.6% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -8246.2779, first found at iteration 91643759
51
 0 2 19 33
 1 2 0 27
 2 2 17 45
 3 3 7 13 27
 4 2 1 12
 5 2 13 25
 6 2 14 23
 7 2 12 20
 8 2 16 50
 9 2 12 40
10 2 13 29
11 2 44 45
12 3 26 41 42
13 2 14 39
14 2 23 39
15 2 13 41
16 2 13 37
17 0
18 2 3 13
19 2 13 29
20 2 45 49
21 2 29 45
22 2 12 27
23 2 28 45
24 2 11 27
25 2 3 40
26 2 20 36
27 2 36 44
28 2 2 45
29 2 17 23
30 2 17 40
31 2 13 42
32 2 44 50
33 2 20 36
34 2 17 28
35 2 10 16
36 2 21 39
37 2 27 38
38 2 29 39
39 2 17 28
40 2 26 39
41 2 17 23
42 2 17 36
43 2 13 41
44 2 20 40
45 1 17
46 2 13 21
47 1 27
48 2 17 46
49 2 13 14
50 2 13 21


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 228103500
  Total time used: 1.0 h
  High score: -8246.2779, first found at iteration 91643759
  Number of re-anneals: 2261

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    76021629
  Deletions -- proposed:    76049151
  Reversals -- proposed:    76032719

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  76021629,  acyclic:  54336461
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  76032719,  acyclic:  50369305

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          83050009
  Scores (cache)            placed         fetched        
      with 0 parents:       51             8864619        
      with 1 parents:       2550           110609801      
      with 2 parents:       11919198       5763310        
      with 3 parents:       66825296       21787428       
      with 4 parents:       4021711        1013781        
      with 5 parents:       281203         37926          

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  54336461,  better score:  2937811,  other accepted:  2068646
  Deletions -- considered:  76049151,  better score:  2135034,  other accepted:  2871340
  Reversals -- considered:  50369305,  better score:  3402256,  other accepted:  1750697
  Average permissivity:     0.039

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -8246.2779, found by thread 1
51
 0 2 19 33
 1 2 0 27
 2 2 17 45
 3 3 7 13 27
 4 2 1 12
 5 2 13 25
 6 2 14 23
 7 2 12 20
 8 2 16 50
 9 2 12 40
10 2 13 29
11 2 44 45
12 3 26 41 42
13 2 14 39
14 2 23 39
15 2 13 41
16 2 13 37
17 0
18 2 3 13
19 2 13 29
20 2 45 49
21 2 29 45
22 2 12 27
23 2 28 45
24 2 11 27
25 2 3 40
26 2 20 36
27 2 36 44
28 2 2 45
29 2 17 23
30 2 17 40
31 2 13 42
32 2 44 50
33 2 20 36
34 2 17 28
35 2 10 16
36 2 21 39
37 2 27 38
38 2 29 39
39 2 17 28
40 2 26 39
41 2 17 23
42 2 17 36
43 2 13 41
44 2 20 40
45 1 17
46 2 13 21
47 1 27
48 2 17 46
49 2 13 14
50 2 13 21

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (33,0) ->   (0,0)   -.2210
Influence score for  (19,0) ->   (0,0)   .4260
Influence score for  (27,0) ->   (1,0)   .0000
Influence score for   (0,0) ->   (1,0)   -.3838
Influence score for  (45,0) ->   (2,0)   .1471
Influence score for  (17,0) ->   (2,0)   .1440
Influence score for  (27,0) ->   (3,0)   -.0565
Influence score for  (13,0) ->   (3,0)   .3292
Influence score for   (7,0) ->   (3,0)   .0000
Influence score for  (12,0) ->   (4,0)   -.1644
Influence score for   (1,0) ->   (4,0)   .0000
Influence score for  (25,0) ->   (5,0)   .4972
Influence score for  (13,0) ->   (5,0)   .2654
Influence score for  (23,0) ->   (6,0)   .0000
Influence score for  (14,0) ->   (6,0)   .0000
Influence score for  (20,0) ->   (7,0)   .3211
Influence score for  (12,0) ->   (7,0)   .0647
Influence score for  (50,0) ->   (8,0)   .0000
Influence score for  (16,0) ->   (8,0)   -.3942
Influence score for  (40,0) ->   (9,0)   .0000
Influence score for  (12,0) ->   (9,0)   .3141
Influence score for  (29,0) ->  (10,0)   .4972
Influence score for  (13,0) ->  (10,0)   .0000
Influence score for  (45,0) ->  (11,0)   .2605
Influence score for  (44,0) ->  (11,0)   .1236
Influence score for  (42,0) ->  (12,0)   .1264
Influence score for  (41,0) ->  (12,0)   .0790
Influence score for  (26,0) ->  (12,0)   -.0549
Influence score for  (39,0) ->  (13,0)   .1664
Influence score for  (14,0) ->  (13,0)   .0000
Influence score for  (39,0) ->  (14,0)   .0000
Influence score for  (23,0) ->  (14,0)   .1605
Influence score for  (41,0) ->  (15,0)   .0000
Influence score for  (13,0) ->  (15,0)   .8109
Influence score for  (37,0) ->  (16,0)   .0000
Influence score for  (13,0) ->  (16,0)   .3286
Influence score for  (13,0) ->  (18,0)   .0000
Influence score for   (3,0) ->  (18,0)   .0741
Influence score for  (29,0) ->  (19,0)   .3307
Influence score for  (13,0) ->  (19,0)   .3489
Influence score for  (49,0) ->  (20,0)   .2621
Influence score for  (45,0) ->  (20,0)   .3143
Influence score for  (45,0) ->  (21,0)   .4790
Influence score for  (29,0) ->  (21,0)   .0000
Influence score for  (27,0) ->  (22,0)   -.3246
Influence score for  (12,0) ->  (22,0)   .0000
Influence score for  (45,0) ->  (23,0)   .3638
Influence score for  (28,0) ->  (23,0)   .0000
Influence score for  (27,0) ->  (24,0)   .0000
Influence score for  (11,0) ->  (24,0)   .0000
Influence score for  (40,0) ->  (25,0)   .0000
Influence score for   (3,0) ->  (25,0)   .3307
Influence score for  (36,0) ->  (26,0)   -.1644
Influence score for  (20,0) ->  (26,0)   .0000
Influence score for  (44,0) ->  (27,0)   .0000
Influence score for  (36,0) ->  (27,0)   .0000
Influence score for  (45,0) ->  (28,0)   .0000
Influence score for   (2,0) ->  (28,0)   .4015
Influence score for  (23,0) ->  (29,0)   .0000
Influence score for  (17,0) ->  (29,0)   .2840
Influence score for  (40,0) ->  (30,0)   .0017
Influence score for  (17,0) ->  (30,0)   .0017
Influence score for  (42,0) ->  (31,0)   .3307
Influence score for  (13,0) ->  (31,0)   .3307
Influence score for  (50,0) ->  (32,0)   -.1500
Influence score for  (44,0) ->  (32,0)   .3218
Influence score for  (36,0) ->  (33,0)   .4174
Influence score for  (20,0) ->  (33,0)   .0000
Influence score for  (28,0) ->  (34,0)   .1619
Influence score for  (17,0) ->  (34,0)   .3311
Influence score for  (16,0) ->  (35,0)   -.3916
Influence score for  (10,0) ->  (35,0)   .0000
Influence score for  (39,0) ->  (36,0)   .0993
Influence score for  (21,0) ->  (36,0)   .0000
Influence score for  (38,0) ->  (37,0)   -.3331
Influence score for  (27,0) ->  (37,0)   .2475
Influence score for  (39,0) ->  (38,0)   .1689
Influence score for  (29,0) ->  (38,0)   .0000
Influence score for  (28,0) ->  (39,0)   .0000
Influence score for  (17,0) ->  (39,0)   .5472
Influence score for  (39,0) ->  (40,0)   .3308
Influence score for  (26,0) ->  (40,0)   -.1646
Influence score for  (23,0) ->  (41,0)   .0000
Influence score for  (17,0) ->  (41,0)   .0000
Influence score for  (36,0) ->  (42,0)   .3311
Influence score for  (17,0) ->  (42,0)   .3269
Influence score for  (41,0) ->  (43,0)   -.3289
Influence score for  (13,0) ->  (43,0)   -.3122
Influence score for  (40,0) ->  (44,0)   .1664
Influence score for  (20,0) ->  (44,0)   .1641
Influence score for  (17,0) ->  (45,0)   .0000
Influence score for  (21,0) ->  (46,0)   .0000
Influence score for  (13,0) ->  (46,0)   .5353
Influence score for  (27,0) ->  (47,0)   .6554
Influence score for  (46,0) ->  (48,0)   .1607
Influence score for  (17,0) ->  (48,0)   .4066
Influence score for  (14,0) ->  (49,0)   .1641
Influence score for  (13,0) ->  (49,0)   .0000
Influence score for  (21,0) ->  (50,0)   .0000
Influence score for  (13,0) ->  (50,0)   -.3251

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -8246.2779\nProject: 50.1\nUser: lsand039\nDataset: 50-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];
    21 [label="BCL3"];
    22 [label="PTGER1"];
    23 [label="LBP"];
    24 [label="MAP3K13"];
    25 [label="LAG3"];
    26 [label="CAMP"];
    27 [label="MLLT1"];
    28 [label="DSG3"];
    29 [label="CYP2C18"];
    30 [label="LPHN2"];
    31 [label="TTC12"];
    32 [label="KANK2"];
    33 [label="KIR2DS5"];
    34 [label="PF4"];
    35 [label="MCF2L2"];
    36 [label="OSBPL1A"];
    37 [label="AP3B2"];
    38 [label="ABCA1"];
    39 [label="SGPL1"];
    40 [label="NTNG1"];
    41 [label="NFE2"];
    42 [label="CABP5"];
    43 [label="NOC2L"];
    44 [label="PTK7"];
    45 [label="CFTR"];
    46 [label="NPY6R"];
    47 [label="SHANK1"];
    48 [label="SNTB2"];
    49 [label="ST8SIA2"];
    50 [label="BMPR2"];

    19->0;
    33->0;
    0->1;
    27->1;
    17->2;
    45->2;
    7->3;
    13->3;
    27->3;
    1->4;
    12->4;
    13->5;
    25->5;
    14->6;
    23->6;
    12->7;
    20->7;
    16->8;
    50->8;
    12->9;
    40->9;
    13->10;
    29->10;
    44->11;
    45->11;
    26->12;
    41->12;
    42->12;
    14->13;
    39->13;
    23->14;
    39->14;
    13->15;
    41->15;
    13->16;
    37->16;
    3->18;
    13->18;
    13->19;
    29->19;
    45->20;
    49->20;
    29->21;
    45->21;
    12->22;
    27->22;
    28->23;
    45->23;
    11->24;
    27->24;
    3->25;
    40->25;
    20->26;
    36->26;
    36->27;
    44->27;
    2->28;
    45->28;
    17->29;
    23->29;
    17->30;
    40->30;
    13->31;
    42->31;
    44->32;
    50->32;
    20->33;
    36->33;
    17->34;
    28->34;
    10->35;
    16->35;
    21->36;
    39->36;
    27->37;
    38->37;
    29->38;
    39->38;
    17->39;
    28->39;
    26->40;
    39->40;
    17->41;
    23->41;
    17->42;
    36->42;
    13->43;
    41->43;
    20->44;
    40->44;
    17->45;
    13->46;
    21->46;
    27->47;
    17->48;
    46->48;
    13->49;
    14->49;
    13->50;
    21->50;
}

